Tree-sitter is a parser generator tool and an incremental parsing library. It can build a concrete syntax tree for a source file and efficiently update the syntax tree as the source file is edited.
i.e., not all gene trees represent the species tree. Phylogenetic discordance is common in phylogenomic datasets, and apart from ILS, additional sources include hybridization, whole-genome duplication ...
As in other organisms, diversification in bacteria leads to entities that we call species, which group together organisms that have evolved separately from others. Species can be differentiated from ...